Science NIH slashes overhead payments for research, sparking outrage - Move to cut indirect cost rate to 15% could cost universities billions of dollars

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7 Feb 2025 By David Malakoff

In a Friday night move that quickly drew howls of protest from the U.S. biomedical research community, President Donald Trump’s administration today announced it is immediately reducing by at least half the so-called indirect cost payments that the National Institutes of Health (NIH) makes to universities, hospitals, and research institutes to help cover facilities and administrative costs.

A 15% indirect cost rate will now apply to all new and existing grants, NIH said in a memo from its Director’s office. Typically, about 30% of an average NIH grant to an institution is earmarked for indirect costs, according to NIH, but some universities get much higher rates. In 2023, NIH, the world’s largest funder of biomedical research, spent nearly $9 billion on indirect costs; the change would likely leave research institutions needing to find billions of dollars from other sources to support laboratories, students, and staff.

“It is… vital to ensure that as many funds as possible go towards direct scientific research costs rather than administrative overhead,” NIH wrote in the memo. The new rate brings NIH into line with the maximum indirect costs rates allowed by private foundations, NIH stated, and is higher than the minimum 10% indirect cost payment NIH says it is required to provide. “This rate will allow grant recipients a reasonable and realistic recovery of indirect costs,” the memo stated.

The reaction from university groups and researchers has been swift and overwhelmingly negative, and some are already arguing the NIH action is illegal.
“This is a surefire way to cripple lifesaving research and innovation,” said a statement from the Council on Governmental Relations (COGR), which tracks federal policy for major universities and medical research centers. “America’s competitors will relish this self-inflicted wound. We urge NIH to rescind this dangerous policy before its harms are felt by Americans.”

Alondra Nelson of the Institute for Advanced Study, former head of the White House Office of Science and Technology Policy, lamented on BlueSky what she said would amount to a "generational restructuring of the US research and development ecosystem." She added that "This funding shift will not only reduce US research leadership, it will put working people out of work and reduce healthcare access."

“This would have the most dramatic alteration on research in the United States that one has seen in decades,” says virologist Larry Corey of the Hutchinson Cancer Center, a former leader of the institution who has managed its $2 billion budget. “No one's saying that that research costs are perfect,” he adds, but indirect costs are critical to paying for research infrastructure. Private foundations that pay lower indirect costs can do so only because universities are making up for any shortfall, says Corey.

The abrupt change represents “a nuclear bomb on university budgets,” says Morgan Polikoff, an education researcher at the University of Southern California. “I mean, listen, it doesn't take a rocket scientist to figure this out. They're just trying to hurt universities.”

This is not the first time Trump has taken aim at reducing indirect costs, which the federal government has been adding to research grants since 1947. In 2017, his first administration proposed reducing NIH’s indirect cost rate to 10% in a budget request to Congress, but lawmakers blocked the change. Slashing NIH’s indirect costs rate was also proposed in Project 2025, a blueprint for an incoming Republican administration that Trump once disavowed but has since embraced.

Traditionally, each university negotiated its own overhead rate—including one rate for facilities and one for administration—with the government every few years. Rates vary widely because of geography—costs are higher in urban areas—and because research expenses differ. Biomedical science, for example, often requires animal facilities, ethics review boards, and pricey equipment that aren't needed for social science. But universities have long complained that even the negotiated rates don't cover true research costs.

Both Republican and Democratic policymakers, in contrast, have tried to rein in overhead payments. Most notably, in 1994 the U.S. government capped the administration rate for universities at 26% after several instances in which universities were found to have applied the money for purposes outside the scope of the grant. President Barack Obama's administration also floated setting an unspecified flat rate, which economists said would increase efficiency and reduce paperwork.
Many who advocate for cutting NIH’s indirect cost rate have long argued that universities are willing to accept lower rates from philanthropic foundations. Today’s NIH notice, for example, notes the Gates Foundation limits indirect costs to 10%, while the Packard Foundation sets the ceiling at 15%. But such reasoning is based on “perverse logic,” Corey says, because foundations use their funds to increase the productivity of research infrastructure already paid for by the federal government. And universities say they are often willing to accept foundation grants that carry low overhead rates because those grants amount to a relatively small fraction of their funding.

Some aspects of the new policy aren’t clear. One question, Polikoff says, is whether researchers who can no longer claim certain costs as indirect could roll them into the direct costs of their research. The NIH memo notes that, in 2023, it spent roughly $26 billion on direct research costs, in addition to the $9 billion in indirect costs.

It is not clear whether institutions could persuade a court to block the new rate. The NIH memo cites federal rules, adopted nearly a decade ago, that appear to empower the agency to impose a new rate. But COGR says the move “contradicts current law and policy.”

It also remains to be seen whether the research community could persuade Congress, currently controlled by Republicans, to block NIH’s change.

This is a developing story.

With reporting by Jon Cohen, Jessica Slater, Meredith Wadman, and Jeff Mervis


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The abrupt change represents “a nuclear bomb on university budgets,” says Morgan Polikoff, an education researcher at the University of Southern California. “I mean, listen, it doesn't take a rocket scientist to figure this out. They're just trying to hurt universities.”
Yes.

Suffer, you parasite ideologues.
 
TL;DR - Indirect costs are a vague grant expense that go to institutions to get spent on whatever the administration wants. While they are supposed to go to basic infrastructure, shared staff salaries, etc., there is literally no oversight.

Hard for me to predict the consequences of this, but I'm sure admins will protect themselves first. It could be a strategy for the Trump admin to force accountability on the practice by sparking a broader discussion for why they exist.
 
hmmmmmmm

Trump freezes foreign aid and Musk closes USAID and suddenly all these left leaning organization are suddenly cash short and starting to do cutbacks and layoff's

hmmmmmmm

:thinking:
 
The whole funding system needs a reform to make sure that research money is actually used for the betterment of USA/mankind. Shit like mutilating animals to get the foregone conclusion that "trans surgeries are totally safe" erodes public trust and wastes tax payer money.
 
I completely believe universities will slash medical research funding before they cut the budgets of the "administration" overseeing it. And then it will be all Trump's fault, and not the shitbags who collect a $200,000 yearly salary just to sign a few papers and return a few phone calls every day.
 
I completely believe universities will slash medical research funding before they cut the budgets of the "administration" overseeing it. And then it will be all Trump's fault, and not the shitbags who collect a $200,000 yearly salary just to sign a few papers and return a few phone calls every day.
Trouble is due to how grants are structured they won't be able to just shuffle money around. The direct funding portion frequently has some pretty strict strings and accounting measures attached, hence the importance of that 30% slush fund.
 
Trouble is due to how grants are structured they won't be able to just shuffle money around. The direct funding portion frequently has some pretty strict strings and accounting measures attached, hence the importance of that 30% slush fund.
Yep, they are either going to have to shore up accounting standards -- good for transparency -- or cut the fat. All around good move.

Private grants cap out at 15% indirect and many have 0% indirect.
 
I completely believe universities will slash medical research funding before they cut the budgets of the "administration" overseeing it. And then it will be all Trump's fault, and not the shitbags who collect a $200,000 yearly salary just to sign a few papers and return a few phone calls every day.
I work in animal care at my state's university and yes, the labs have been freaking out.
Yep, they are either going to have to shore up accounting standards -- good for transparency -- or cut the fat. All around good move.

What kills me is that the faculty freaking out over this are the ones that bitch and moan about administrative bloat and regulatory overkill.

Personally, I see this as an opportunity for faculty to take charge of their institutions again, but I know most of them are too spineless.
 
Typically, about 30% of an average NIH grant to an institution is earmarked for indirect costs, according to NIH, but some universities get much higher rates.
are you telling me 1/3 to possibly 1/2, or more, of all grant money the NIH was granting wasn’t even being used for research and was being used to bloat administrative bullshit?

i had no idea how much slush fund bloat the government was funding until it started being cut. what a crazy week
 
are you telling me 1/3 to possibly 1/2, or more, of all grant money the NIH was granting wasn’t even being used for research and was being used to bloat administrative bullshit?

i had no idea how much slush fund bloat the government was funding until it started being cut. what a crazy week

Yep. Administrative bullshit, but also legitimate things like building maintenance, utilities, etc. Theoretically, public institutions have to report the breakdown of their finances, and answer to a regulatory body like a "Board of Regents. But the boards typically don't give a shit until the state government gets on them.

But yes, more than 50% indirect costs is not uncommon, even at public universities.
 
Absolutely fucking brilliant move.
The last grant I was involved with winning before I left academia was about 15 million for five years.
Our lab suite was two large rooms and a few cupboard sized ones in a dilapidated building. Downstairs we’d paid for (along with a few other groups) the animal unit to be rebuilt, which the uni fucked up.
So we paid a massive portion of that money to the uni. We bought every bit of kit, all the reagent, all machines, everything. We paid out own workers. We worked out once that for what we paid the uni we could have had an entire new build on an industrial estate kitted out for us and still have enough over to give everyone a pay rise or empty another person.
That grant money was partly raised by a cancer charity - people giving their hard earned money. We got nothing for it, it went to uni admin. I’m really pleased they’re going this.
 
Good. More taxpayer dollars saved, fewer jobs for the no-loads. They have nobody but themselves to blame.
 
These monsters harmed animals in the name of gender ideology! These fucking cultists deserve it! Taking money away is not enough, they should be lynched for this evil shit.
 
Trouble is due to how grants are structured they won't be able to just shuffle money around. The direct funding portion frequently has some pretty strict strings and accounting measures attached, hence the importance of that 30% slush fund.

Personally If I was in charge I'd go even further but I'd restructure the whole edifice not just add some restrictions that may or may not work out. The move while good intentioned and possibly even workable with some adjustment feels like the move of someone who simulatenously wants to do too much and too little.

Theres fat to be trimmed for sure but they're coming at this as outside bean counters. They really need someone who is on their side but understands the system preferably having spent some time in the ivory tower themselves. The problem isn't necessarily the percentage of indirect costs. Its that modern research, especially bio research is built on an antiquated pseudoguild system layered several kilometers deep with perverse incentives and spiraling hyperspecialization. Someone who can get into specifics like this rather than just going hurr durr waste would probably be useful.

Having resident experts here and in the other major areas they are working on can help with the dismantling and restructuring and also to articulate a good justification to the people and defense to critics. It would be much more elegant than making a bunch of moves you can't really defend properly and then be forced to roll them back after a barrage of negative coverage.
 
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Personally If I was in charge I'd go even further but I'd restructure the whole edifice not just add some restrictions that may or may not work out. The move while good intentioned and possibly even workable with some adjustment feels like the move of someone who simulatenously wants to do too much and too little.

Theres fat to be trimmed for sure but they're coming at this as outside bean counters. They really need someone who is on their side but understands the system preferably having spent some time in the ivory tower themselves. The problem isn't necessarily the percentage of indirect costs. Its that modern research, especially bio research is built on an antiquated pseudoguild system layered several kilometers deep with perverse incentives and spiraling hyperspecialization. Someone who can get into specifics like this rather than just going hurr durr waste would probably be useful.

Having resident experts here and in the other major areas they are working on can help with the dismantling and restructuring and also to articulate a good justification to the people and defense to critics. It would be much more elegant than making a bunch of moves you can't really defend properly and then be forced to roll them back after a barrage of negative coverage.
Even in an ideal world it would take a great deal of time to identify people who are both open to reform and with the institutional cachet to help force the reforms through against the opposition, and you'd still have a serious risk of institutional capture along the way. While obviously something like that is going to be needed in the long run, the people who do that are going to have a much easier time of things if a massive layer of institutional fat and the inertia that goes along with it has already been disposed of.
 
They really need someone who is on their side but understands the system preferably having spent some time in the ivory tower themselves.

Tbf the current acting NIH director and Trump’s incoming nominee are/were long-time biomed researchers, so this announcement was likely pretty calculated.

And based on how they are both huge critics of how COVID was handled, I'm optimistic they're bold enough to head restructuring.
 
My friend is an admin at a big university in their biomed dept and she is never not working. She works even when she's sick and is always on call for the faculty's continuous issues. Maybe her health will improve if she loses her job bc I'm worried she's going to have a heart attack. But she's the one example I know of personally in this particular field and I'm not sure who would do all the work she does if her job and/or her staff was axed.
 
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